Convenience functions for DS9’s (XPA) commands¶
Note
The full list of XPA access points can be found at: http://ds9.si.edu/doc/ref/xpa.html and XPA itself is maintained here https://github.com/ericmandel/xpa
If there is no convenience function for an access point that you would like to use, you can still call it using the imexam
hooks into the xpa GET and SET functions. They are aliased to your object (for example “window”) as window.window.xpa.get() or window.window.xpa.set()
- alignwcs (on=True):
align loaded images by wcs,
- blink (blink=None,interval=None):
blink frames
- clear_contour ():
clear contours from the screen
- cmap (color=None,load=None,invert=False,save=False, filename=’colormap.ds9’):
set the color map of the current frame The available maps are “heat”,”grey”,”cool”,”aips0”,”a”,”b”,”bb”,”he”,”i8”
- color: string
color must be set to one of the available DS9 color map names
- load: string, optional
set to the filename which is a valid colormap lookup table valid contrast values are from 0 to 10, and valid bias values are from 0 to 1
- invert: bool, optional
invert the colormap
- save: bool, optional
save the current colormap as a file
- filename: string, optional
the name of the file to save the colormap to
- colorbar (on=True):
turn the colorbar at the bottom of the screen on and off
- contour (on=True, construct=True):
on: Set to true to turn on contours
- construct: optional
Will open the contour dialog box which has more options
- contour_load (filename):
load contours into the window from the specified filename
- crosshair (x=none,y=none,coordsys=”physical”,skyframe=”wcs”,skyformat=”fk5”,match=False,lock=False):
control the current position of the crosshair in the current frame, crosshair mode is turned on
- x: string or int
The value of x is converted to a string for the call to XPA, use a value here appropriate for the skyformat you choose
- y: string or int
The value of y is converted to a string for the call to XPA, use a value here appropriate for the skyformat you choose
- coordsys: string, optional
The coordinate system your x and y are defined in
- skyframe: string, optional
If skyframe has “wcs” in it then skyformat is also sent to the XPA
- skyformat: string, optional
Used with skyframe, specifies the format of the coordinate which were given in x and y
- match: bool, optional
If set to True, then the wcs is matched for the frames
- lock: bool, optional
If set to True, then the frame is locked in wcs
- cursor (x=None,y=None):
move the cursor in the current frame to the specified image pixel, it will also move selected regions
- disp_header ():
display the current header using the ds9 header display window
- frame (n=None):
convenience function to switch frames or load a new frame (if that number does not already exist)
- n: int, string, optional
The frame number to open or change to. If the number specified doesn’t exist, a new frame will be opened If nothing is specified, then the current frame number will be returned. The value of n is converted to a string before passing to the XPA
frame(1) sets the current frame to 1 frame(“last”) set the current frame to the last frame frame() returns the number of the current frame frame(“new”) opens a new frame frame(3) opens frame 3 if it doesn’t exist already, otherwise goes to frame 3
- get_header ():
return the header of the current extension as a string, or None if there’s a problem
- grid (on=True, param=False):
turn the grid on and off if param is True, then a diaglog is opened for the grid parameters
- hideme ():
lower the ds9 window on your display
- load_fits (fname=None, extname=1, extver=’SCI’):
load a fits image to the current frame. You provide just the name, or either of the extname or extver, or you can specify the extension with the filename string. For example:
load_fits(‘something.fits’,extver=’SCI’) will load the SCI,1 extension
load_fits(‘something.fits[SCI,1]’) will load the SCI,1 extension
load_fits(‘something.fits’) will load the main data extension; the only data information in the case of simple fits, or the first extension in the case of a multiextension file
- load_region (filename):
load the specified DS9 formatted region filename
- load_rgb (red, green, blue,scale=False, lockwcs=False):
load 3 images into an RGBimage frame, the parameters are:
red: string, The name of the fits file which will be loaded into the red channel green: string, The name of the fits file which will be loaded into the green channel blue: string, The name of the fits file which will be loaded into the blue channel scale: bool, If True, then each image will be scale with zscale() after loading lockwcs: bool, If True, then the image positions will be locked to each other using the WCS information in their headers
- load_mef_as_cube (filename=None):
Load a Mult-Extension-Fits image into one frame as an image cube in the image viewer
- load_mef_as_multi (filename=None):
Load a Mult-Extension-Fits image into multiple frames in the image viewer
- match (coordsys=”physical”,frame=False,crop=False,fslice=False,scale=False,bin=False,colorbar=False,smooth=False,crosshair=False):
match all other frames to the current frame using the specified option. You can only choose one of the options at a time, so set frame=False and something else in addition to your choice if you don’t want the default option.
- coordsys: string, optional
The coordinate system to use
- frame: bool, optional
Match all other frames to the current frame, using the set coordsys
- crop: bool, optional
Set the current image display area, using the set coordsys
- fslice: bool, optional
Match current slice in all frames
- scale: bool, optional
Match to the current scale for all frames
- bin: bool, optional
Match to the current binning for all frames
- colorbar: bool, optional
Match to the current colorbar for all frames
- smooth: bool, optional
Match to the current smoothing for all frames
- crosshair: bool, optional
Match the crosshair in all frames, using the current coordsys
- nancolor (color=”red”):
set the not-a-number color, default is red
- panto_image (x, y)
convenience function to change to x,y images coordinates using ra,dec
- panto_wcs (x, y,system=’fk5’):
pan to the wcs coordinates in the image using the specified system
- x: string
The x location to move to, specified using the given system
- y: string
The y location to move to
- system: string
The reference system that x and y were specified in, they should be understood by DS9
- rotate (value, to=False):
- value: float [degrees]
Rotate the current frame {value} degrees If value is 0, then the current rotation is printed
- to: bool
Rotate the current frame to the specified value instead
- save_header (filename=None):
save the header of the current image to a file
- save_rgb (filename=None):
save an rgbimage frame as an MEF fits file
- save_regions (filename=None):
Save the regions in the current window to a DS9 style regions file
- filename: string
The nameof th file to which the regions displayed in the current window are saved If no filename is provided then it will try and save the regions to the name of the file in the current display with _regions.txt appended
If a file of that name already exists on disk it will no attempt to overwrite it
- scale (scale=’zscale’):
Scale the image on display. The default zscale is the most widely used option:
Syntax scales available: [linear|log|pow|sqrt|squared|asinh|sinh|histequ] [log exp <value>] [datasec yes|no] [limits <minvalue> <maxvalue>] [mode minmax|<value>|zscale|zmax] [scope local|global] [match] [lock [yes|no]] [open|close]
- set_region (region_string):
display a region using the specifications in region_string example: set_region(“physical; ruler 200 300 200 400”)
- showme ():
raise the ds9 display window
- showpix ():
display the pixel value table
- snapsave (filename,format=None,resolution=100):
create a snap shot of the current window and save in specified format. If no format is specified the filename extension is used
- filename: str, optioan
filename of output image, the extension in the filename can also be used to specify the format If no filename is specified, then the filename will be constructed from the name of the currently displayed image with _snap.jpg appended.
- format: str, optional
available formats are fits, eps, gif, tiff, jpeg, png If no format is specified the filename extension is used
- resolution: int, optional
1 to 100, for jpeg images
- zoom (par=”to fit”):
- par: string
it can be a number (ranging 0.1 to 8), and successive calls continue zooming in the same direction it can be two numbers ‘4 2’, which specify zoom on different axis if can be to a specific value ‘to 8’ or ‘to fit’, “to fit” is the default it can be ‘open’ to open the dialog box it can be ‘close’ to close the dialog box (only valid if the box is already open)
- zoomtofit ():
zoom to the best fit for the display window